Basic Information
Gene Model:Bol045811
Gene Family:U-box Gene Family
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
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Gene Structure
Nucleotide Length:2739 bp
Transcript Length:2433 bp
Protein Length:810 aa
Strand:+
Location:C08: 34875756 : 34878494
Gene CDSs(4): 1-270 | 411-527 | 617-2602 | 2680-2739 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0005515 Molecular Function protein binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
O221930.0PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2
TrEMBL
Best HitE_value Description
D7LEP30.0D7LEP3_ARALY Armadillo/beta-catenin repeat family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481186 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vcn:VOLCADRAFT_415288e-23K08332VAC8vacuolar protein 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5958(10 genes,7 taxa):Arabidopsis thalianaAT2G23140.1
ORTHOMCL5958(10 genes,7 taxa):Brassica oleraceaBol031706
ORTHOMCL5958(10 genes,7 taxa):Brassica oleraceaBol045811
ORTHOMCL5958(10 genes,7 taxa):Brassica rapaBra032180
ORTHOMCL5958(10 genes,7 taxa):Oryza sativaOs01t0884400-01
ORTHOMCL5958(10 genes,7 taxa):Oryza sativaOs08t0110500-01
ORTHOMCL5958(10 genes,7 taxa):Populus trichocarpaPOPTR_0005s18820.1
ORTHOMCL5958(10 genes,7 taxa):Sorghum bicolorSb03g041930.1
ORTHOMCL5958(10 genes,7 taxa):Sorghum bicolorSb07g001110.1
ORTHOMCL5958(10 genes,7 taxa):Carica papayaevm.TU.supercontig_6.66
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:33683678..34912837 (-)A.thalianaChr2:9823965..11004235 (+)112
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:34829730..35195467 (+)B.rapaA09:17912014..18346326 (-)20
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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