Basic Information
Gene Model:Bol045781
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:2649 bp
Transcript Length:1017 bp
Protein Length:338 aa
Strand:+
Location:C08: 34420103 : 34422751
Gene CDSs(6): 1-297 | 375-551 | 709-774 | 1483-1548 | 1882-1935 | 2293-2649 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9ZUG91e-129BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1
TrEMBL
Best HitE_value Description
D7LHI21e-128D7LHI2_ARALY Basic helix-loop-helix family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481281 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G095302e-17K12126PIF3phytochrome-interacting factor 3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4658(11 genes,7 taxa):Arabidopsis thalianaAT2G24260.1
ORTHOMCL4658(11 genes,7 taxa):Brassica oleraceaBol041940
ORTHOMCL4658(11 genes,7 taxa):Brassica oleraceaBol045781
ORTHOMCL4658(11 genes,7 taxa):Brassica rapaBra007863
ORTHOMCL4658(11 genes,7 taxa):Brassica rapaBra032111
ORTHOMCL4658(11 genes,7 taxa):Vitis viniferaGSVIVT01023585001
ORTHOMCL4658(11 genes,7 taxa):Populus trichocarpaPOPTR_0006s20070.1
ORTHOMCL4658(11 genes,7 taxa):Populus trichocarpaPOPTR_0018s11800.1
ORTHOMCL4658(11 genes,7 taxa):Sorghum bicolorSb02g024750.1
ORTHOMCL4658(11 genes,7 taxa):Sorghum bicolorSb04g035890.1
ORTHOMCL4658(11 genes,7 taxa):Carica papayaevm.TU.contig_30708.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:33940594..34597967 (-)A.thalianaChr4:14878783..15522593 (+)36
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:34086893..35195467 (+)B.rapaA09:7206614..7830755 (-)50
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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