Basic Information
Gene Model:Bol045768
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:17293 bp
Transcript Length:3009 bp
Protein Length:1002 aa
Strand:+
Location:C08: 34250093 : 34267385
Gene CDSs(12): 1-69 | 2326-2581 | 9894-9949 | 10331-10693 | 10760-11155 | 12434-12520 | 12853-13026 | 13768-14127 | 14262-14646 | 16267-16391 | 16482-16952 | 17027-17293 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
P0CAP52e-92REM13_ARATH B3 domain-containing protein REM13 OS=Arabidopsis thaliana GN=REM13 PE=2 SV=1
TrEMBL
Best HitE_value Description
D7LIB25e-94D7LIB2_ARALY Transcriptional factor B3 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481325 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27767(2 genes,2 taxa):Brassica oleraceaBol045768
ORTHOMCL27767(2 genes,2 taxa):Brassica rapaBra007836
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:33940594..34597967 (-)A.thalianaChr4:14878783..15522593 (+)36
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:34086893..35195467 (+)B.rapaA09:7206614..7830755 (-)50
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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