Basic Information
Gene Model:Bol045761
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1797 bp
Transcript Length:1077 bp
Protein Length:358 aa
Strand:+
Location:C08: 34083991 : 34085787
Gene CDSs(9): 1-117 | 217-280 | 386-494 | 589-742 | 821-1070 | 1163-1239 | 1327-1379 | 1467-1521 | 1600-1797 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
O817160.0P2C21_ARATH Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1
TrEMBL
Best HitE_value Description
D7LK410.0D7LK41_ARALY Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_344104 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G250700.0K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13965(5 genes,3 taxa):Arabidopsis thalianaAT2G25070.1
ORTHOMCL13965(5 genes,3 taxa):Brassica oleraceaBol014775
ORTHOMCL13965(5 genes,3 taxa):Brassica oleraceaBol045761
ORTHOMCL13965(5 genes,3 taxa):Brassica rapaBra007820
ORTHOMCL13965(5 genes,3 taxa):Brassica rapaBra032043
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:33940594..34597967 (-)A.thalianaChr4:14878783..15522593 (+)36
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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