Basic Information
Gene Model:Bol045742
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1413 bp
Transcript Length:1179 bp
Protein Length:392 aa
Strand:+
Location:C08: 33813403 : 33814815
Gene CDSs(3): 1-189 | 345-757 | 837-1413 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9SLA10.0P2C22_ARATH Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1
TrEMBL
Best HitE_value Description
D7LL670.0D7LL67_ARALY Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481413 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_10535701e-144K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7610(9 genes,7 taxa):Arabidopsis thalianaAT2G25620.1
ORTHOMCL7610(9 genes,7 taxa):Brassica oleraceaBol045742
ORTHOMCL7610(9 genes,7 taxa):Brassica rapaBra007784
ORTHOMCL7610(9 genes,7 taxa):Vitis viniferaGSVIVT01035778001
ORTHOMCL7610(9 genes,7 taxa):Oryza sativaOs06t0597200-01
ORTHOMCL7610(9 genes,7 taxa):Oryza sativaOs06t0597200-02
ORTHOMCL7610(9 genes,7 taxa):Populus trichocarpaPOPTR_0006s26450.1
ORTHOMCL7610(9 genes,7 taxa):Populus trichocarpaPOPTR_0018s01230.1
ORTHOMCL7610(9 genes,7 taxa):Sorghum bicolorSb10g023220.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:33683678..34912837 (-)A.thalianaChr2:9823965..11004235 (+)112
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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