Basic Information
Gene Model:Bol045655
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1469 bp
Transcript Length:675 bp
Protein Length:224 aa
Strand:+
Location:C08: 32674568 : 32676036
Gene CDSs(8): 1-66 | 179-304 | 389-545 | 784-873 | 970-1016 | 1122-1166 | 1243-1305 | 1389-1469 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
Swiss-Prot
Best HitE_value Description
Q94KK52e-94SYP73_ARATH Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1
TrEMBL
Best HitE_value Description
D7LS991e-83D7LS99_ARALY Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_324578 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G614504e-94K08506SYP7syntaxin of plants SYP7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL22822(2 genes,2 taxa):Arabidopsis thalianaAT3G61450.1
ORTHOMCL22822(2 genes,2 taxa):Brassica oleraceaBol045655
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:31350109..33628428 (+)A.thalianaChr3:21609307..23437344 (+)253
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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