Basic Information
Gene Model:Bol045651
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1861 bp
Transcript Length:1215 bp
Protein Length:404 aa
Strand:+
Location:C08: 32648599 : 32650459
Gene CDSs(7): 1-244 | 340-443 | 537-658 | 745-849 | 962-1190 | 1273-1596 | 1775-1861 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q8GZ841e-130PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q3EAG21e-129Q3EAG2_ARATH Uncharacterized protein OS=Arabidopsis thaliana GN=At3g61390 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15697(4 genes,4 taxa):Arabidopsis thalianaAT3G61390.2
ORTHOMCL15697(4 genes,4 taxa):Brassica oleraceaBol045651
ORTHOMCL15697(4 genes,4 taxa):Brassica rapaBra007600
ORTHOMCL15697(4 genes,4 taxa):Oryza sativaOs10t0552400-01
Tandem Duplication
ClusterGene Num.Gene List
Cluster_6702Bol045651 Bol045652 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:31350109..33628428 (+)A.thalianaChr3:21609307..23437344 (+)253
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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