Basic Information
Gene Model:Bol045558
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1496 bp
Transcript Length:633 bp
Protein Length:210 aa
Strand:+
Location:C08: 31674863 : 31676358
Gene CDSs(4): 1-28 | 397-425 | 831-931 | 1022-1496 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9LX452e-85PIRL4_ARATH Putative pirin-like protein At3g59260 OS=Arabidopsis thaliana GN=At3g59260 PE=2 SV=1
TrEMBL
Best HitE_value Description
D7LWB41e-83D7LWB4_ARALY Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_324401 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G431201e-69K06911K06911--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27750(2 genes,2 taxa):Brassica oleraceaBol045558
ORTHOMCL27750(2 genes,2 taxa):Brassica rapaBra007438
Tandem Duplication
ClusterGene Num.Gene List
Cluster_10382Bol045557 Bol045558 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:31350109..33628428 (+)A.thalianaChr3:21609307..23437344 (+)253
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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