Basic Information
Gene Model:Bol045557
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1463 bp
Transcript Length:873 bp
Protein Length:290 aa
Strand:+
Location:C08: 31672463 : 31673925
Gene CDSs(7): 1-110 | 213-262 | 382-420 | 524-552 | 645-707 | 796-896 | 983-1463 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9LX491e-139PRN1_ARATH Pirin-1 OS=Arabidopsis thaliana GN=PRN1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q147N71e-138Q147N7_ARATH At3g59220 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G431201e-113K06911K06911--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15687(4 genes,3 taxa):Arabidopsis thalianaAT3G59220.1
ORTHOMCL15687(4 genes,3 taxa):Brassica oleraceaBol004974
ORTHOMCL15687(4 genes,3 taxa):Brassica oleraceaBol045557
ORTHOMCL15687(4 genes,3 taxa):Brassica rapaBra014547
Tandem Duplication
ClusterGene Num.Gene List
Cluster_10382Bol045557 Bol045558 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:31350109..33628428 (+)A.thalianaChr3:21609307..23437344 (+)253
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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