Basic Information
Gene Model:Bol045476
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1233 bp
Transcript Length:708 bp
Protein Length:235 aa
Strand:+
Location:C08: 30643124 : 30644356
Gene CDSs(5): 1-106 | 206-303 | 449-526 | 718-788 | 879-1233 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803661e-90ARR9_ARATH Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1
TrEMBL
Best HitE_value Description
D7LVM99e-94D7LVM9_ARALY Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486148 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G570402e-90K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1316(18 genes,8 taxa):Arabidopsis thalianaAT2G41310.1
ORTHOMCL1316(18 genes,8 taxa):Arabidopsis thalianaAT3G57040.1
ORTHOMCL1316(18 genes,8 taxa):Brassica oleraceaBol005156
ORTHOMCL1316(18 genes,8 taxa):Brassica oleraceaBol045476
ORTHOMCL1316(18 genes,8 taxa):Brassica rapaBra003265
ORTHOMCL1316(18 genes,8 taxa):Brassica rapaBra007295
ORTHOMCL1316(18 genes,8 taxa):Brassica rapaBra016943
ORTHOMCL1316(18 genes,8 taxa):Vitis viniferaGSVIVT01013497001
ORTHOMCL1316(18 genes,8 taxa):Vitis viniferaGSVIVT01013505001
ORTHOMCL1316(18 genes,8 taxa):Vitis viniferaGSVIVT01033610001
ORTHOMCL1316(18 genes,8 taxa):Oryza sativaOs11t0143300-01
ORTHOMCL1316(18 genes,8 taxa):Oryza sativaOs11t0143300-02
ORTHOMCL1316(18 genes,8 taxa):Oryza sativaOs12t0139400-00
ORTHOMCL1316(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s03950.1
ORTHOMCL1316(18 genes,8 taxa):Populus trichocarpaPOPTR_0016s03750.1
ORTHOMCL1316(18 genes,8 taxa):Sorghum bicolorSb05g002590.1
ORTHOMCL1316(18 genes,8 taxa):Sorghum bicolorSb08g001140.1
ORTHOMCL1316(18 genes,8 taxa):Carica papayaevm.TU.supercontig_5.205
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:29129169..31352420 (+)A.thalianaChr3:20318412..21566482 (+)209
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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