Basic Information
Gene Model:Bol045456
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:870 bp
Transcript Length:306 bp
Protein Length:101 aa
Strand:+
Location:C08: 30240956 : 30241825
Gene CDSs(4): 1-49 | 231-316 | 595-668 | 774-870 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FPR66e-42ARR17_ARATH Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1
TrEMBL
Best HitE_value Description
D7LVF33e-40D7LVF3_ARALY Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_666512 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G563807e-42K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:29129169..31352420 (+)A.thalianaChr3:20318412..21566482 (+)209
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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