Basic Information
Gene Model:Bol045384
Gene Family:U-box Gene Family
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:5471 bp
Transcript Length:2694 bp
Protein Length:897 aa
Strand:+
Location:C08: 29129169 : 29134639
Gene CDSs(13): 1-43 | 259-338 | 744-827 | 938-1032 | 1138-1243 | 1355-1444 | 1550-1636 | 1777-1838 | 1927-2024 | 2785-3110 | 3295-3411 | 3511-3924 | 4380-5471 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0003924 Molecular Function GTPase activity
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0005515 Molecular Function protein binding
GO:0005525 Molecular Function GTP binding
GO:0005622 Cellular Component intracellular
GO:0006886 Biological Process intracellular protein transport
GO:0006913 Biological Process nucleocytoplasmic transport
GO:0007165 Biological Process signal transduction
GO:0007264 Biological Process small GTPase mediated signal transduction
GO:0015031 Biological Process protein transport
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8VZ400.0PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1
TrEMBL
Best HitE_value Description
D7LUY40.0D7LUY4_ARALY Armadillo/beta-catenin repeat family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_906899 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G548401e-100K07976RABRab family, other
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL602(25 genes,8 taxa):Arabidopsis thalianaAT2G28830.1
ORTHOMCL602(25 genes,8 taxa):Arabidopsis thalianaAT3G46510.1
ORTHOMCL602(25 genes,8 taxa):Arabidopsis thalianaAT3G54850.1
ORTHOMCL602(25 genes,8 taxa):Brassica oleraceaBol018774
ORTHOMCL602(25 genes,8 taxa):Brassica oleraceaBol033248
ORTHOMCL602(25 genes,8 taxa):Brassica oleraceaBol041392
ORTHOMCL602(25 genes,8 taxa):Brassica oleraceaBol045384
ORTHOMCL602(25 genes,8 taxa):Brassica rapaBra007105
ORTHOMCL602(25 genes,8 taxa):Brassica rapaBra018212
ORTHOMCL602(25 genes,8 taxa):Brassica rapaBra033820
ORTHOMCL602(25 genes,8 taxa):Brassica rapaBra035665
ORTHOMCL602(25 genes,8 taxa):Vitis viniferaGSVIVT01016225001
ORTHOMCL602(25 genes,8 taxa):Oryza sativaOs03t0275900-01
ORTHOMCL602(25 genes,8 taxa):Oryza sativaOs03t0275900-03
ORTHOMCL602(25 genes,8 taxa):Oryza sativaOs06t0102700-01
ORTHOMCL602(25 genes,8 taxa):Oryza sativaOs12t0570000-01
ORTHOMCL602(25 genes,8 taxa):Populus trichocarpaPOPTR_0001s24550.1
ORTHOMCL602(25 genes,8 taxa):Populus trichocarpaPOPTR_0008s03560.1
ORTHOMCL602(25 genes,8 taxa):Populus trichocarpaPOPTR_0009s03500.1
ORTHOMCL602(25 genes,8 taxa):Populus trichocarpaPOPTR_0010s23330.1
ORTHOMCL602(25 genes,8 taxa):Sorghum bicolorSb01g039580.1
ORTHOMCL602(25 genes,8 taxa):Sorghum bicolorSb08g018765.1
ORTHOMCL602(25 genes,8 taxa):Sorghum bicolorSb10g000280.1
ORTHOMCL602(25 genes,8 taxa):Carica papayaevm.TU.supercontig_53.126
ORTHOMCL602(25 genes,8 taxa):Carica papayaevm.TU.supercontig_81.170
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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