Basic Information
Gene Model:Bol045362
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000001_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2860 bp
Transcript Length:1866 bp
Protein Length:621 aa
Strand:+
Location:Scaffold000001_P2: 3041386 : 3044245
Gene CDSs(6): 1-166 | 539-1153 | 1249-1287 | 1384-1668 | 2037-2522 | 2586-2860 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0006071 Biological Process glycerol metabolic process
GO:0006629 Biological Process lipid metabolic process
GO:0008081 Molecular Function phosphoric diester hydrolase activity
GO:0008889 Molecular Function glycerophosphodiester phosphodiesterase activity
Swiss-Prot
Best HitE_value Description
Q9SZ110.0GLPQ2_ARATH Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=2
TrEMBL
Best HitE_value Description
D7MF640.0D7MF64_ARALY MRH5/SHV3 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492137 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cin:1001835043e-08K01126E3.1.4.46, glpQglycerophosphoryl diester phosphodiesterase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G66910.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G66930.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G66970.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G66980.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT1G67000.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT3G20520.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT4G26690.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT5G38260.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT5G55480.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT5G58050.1
ORTHOMCL31(107 genes,8 taxa):Arabidopsis thalianaAT5G58170.1
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol003911
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol003912
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol004712
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol006791
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol007009
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol008329
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol012590
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol015555
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol015566
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol015658
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol016947
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol020230
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol026000
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol026653
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol027297
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol027908
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol029936
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol030799
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol039669
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol042301
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol042319
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045080
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045085
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045087
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045362
ORTHOMCL31(107 genes,8 taxa):Brassica oleraceaBol045363
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra000044
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra001790
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra002676
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra002904
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra002912
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra003643
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra004101
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra004198
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra004199
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra006785
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra012124
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra012561
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra014821
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra017457
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra019073
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra019074
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra019092
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra020384
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra020395
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra023743
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra023808
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra024731
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra025543
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra026409
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra027112
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra027113
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra028979
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra030085
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra033307
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra034036
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra034037
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra034038
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra034041
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra035209
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra035244
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra035289
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra035774
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra038428
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra038467
ORTHOMCL31(107 genes,8 taxa):Brassica rapaBra039626
ORTHOMCL31(107 genes,8 taxa):Vitis viniferaGSVIVT01003731001
ORTHOMCL31(107 genes,8 taxa):Vitis viniferaGSVIVT01008328001
ORTHOMCL31(107 genes,8 taxa):Vitis viniferaGSVIVT01030995001
ORTHOMCL31(107 genes,8 taxa):Vitis viniferaGSVIVT01037754001
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs01t0690600-01
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs01t0690800-01
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs02t0187400-01
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs02t0588500-02
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs04t0472300-01
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs04t0472300-02
ORTHOMCL31(107 genes,8 taxa):Oryza sativaOs08t0503200-01
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0001s37160.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0001s37170.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0004s09630.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0005s15310.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0005s15340.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0005s15370.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0005s15410.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0006s20170.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0018s11890.1
ORTHOMCL31(107 genes,8 taxa):Populus trichocarpaPOPTR_0418s00210.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb02g039350.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb03g031670.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb03g031680.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb04g024440.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb06g019730.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb07g028050.1
ORTHOMCL31(107 genes,8 taxa):Sorghum bicolorSb10g025000.1
ORTHOMCL31(107 genes,8 taxa):Carica papayaevm.TU.supercontig_12.221
ORTHOMCL31(107 genes,8 taxa):Carica papayaevm.TU.supercontig_12.222
Tandem Duplication
ClusterGene Num.Gene List
Cluster_2553Bol045360 Bol045361 Bol045362 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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