Basic Information
Gene Model:Bol045299
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000001_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1875 bp
Transcript Length:1620 bp
Protein Length:539 aa
Strand:+
Location:Scaffold000001_P2: 1515801 : 1517675
Gene CDSs(3): 1-339 | 501-1318 | 1413-1875 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q4IM481e-08MCH1_GIBZE Probable transporter MCH1 OS=Gibberella zeae GN=MCH1 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9LUF80.0Q9LUF8_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At5g50520 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15942(4 genes,3 taxa):Arabidopsis thalianaAT5G50520.1
ORTHOMCL15942(4 genes,3 taxa):Arabidopsis thalianaAT5G50630.1
ORTHOMCL15942(4 genes,3 taxa):Brassica oleraceaBol045299
ORTHOMCL15942(4 genes,3 taxa):Brassica rapaBra022521
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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