Basic Information
Gene Model:Bol045205
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000001_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2480 bp
Transcript Length:1149 bp
Protein Length:382 aa
Strand:-
Location:C06: 37940454 : 37942933
Gene CDSs(7): 1-203 | 274-336 | 1103-1219 | 1422-1659 | 1760-1918 | 2012-2163 | 2264-2480 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1632e-545NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
D7KNU00.0D7KNU0_ARALY Nodulin MtN21 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473821 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11250(7 genes,4 taxa):Arabidopsis thalianaAT1G44800.1
ORTHOMCL11250(7 genes,4 taxa):Brassica oleraceaBol033399
ORTHOMCL11250(7 genes,4 taxa):Brassica oleraceaBol045205
ORTHOMCL11250(7 genes,4 taxa):Brassica rapaBra014029
ORTHOMCL11250(7 genes,4 taxa):Brassica rapaBra040619
ORTHOMCL11250(7 genes,4 taxa):Oryza sativaOs10t0210500-01
ORTHOMCL11250(7 genes,4 taxa):Oryza sativaOs10t0210500-02
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:37655362..40697763 (+)A.thalianaChr1:16847781..18009989 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:37716436..40521319 (+)B.rapaA08:14543939..15962959 (+)29
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo