Basic Information
Gene Model:Bol045158
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000001_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1772 bp
Transcript Length:1122 bp
Protein Length:373 aa
Strand:-
Location:C06: 39853893 : 39855664
Gene CDSs(2): 1-141 | 792-1772 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9LNF40.0P2C13_ARATH Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana GN=At1g48040 PE=2 SV=2
TrEMBL
Best HitE_value Description
D7KC070.0D7KC07_ARALY Protein phosphatase type 2C OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473940 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43377233e-94K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9142(8 genes,6 taxa):Arabidopsis thalianaAT1G48040.1
ORTHOMCL9142(8 genes,6 taxa):Brassica oleraceaBol045158
ORTHOMCL9142(8 genes,6 taxa):Brassica rapaBra018701
ORTHOMCL9142(8 genes,6 taxa):Vitis viniferaGSVIVT01017639001
ORTHOMCL9142(8 genes,6 taxa):Populus trichocarpaPOPTR_0008s10010.1
ORTHOMCL9142(8 genes,6 taxa):Populus trichocarpaPOPTR_0008s10010.2
ORTHOMCL9142(8 genes,6 taxa):Populus trichocarpaPOPTR_0010s16130.1
ORTHOMCL9142(8 genes,6 taxa):Carica papayaevm.TU.supercontig_146.66
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:37655362..40697763 (+)A.thalianaChr1:16847781..18009989 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:37716436..40521319 (+)B.rapaA08:14543939..15962959 (+)29
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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