Basic Information
Gene Model:Bol045154
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000001_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:4883 bp
Transcript Length:3990 bp
Protein Length:1329 aa
Strand:-
Location:C06: 39975880 : 39980762
Gene CDSs(10): 1-108 | 193-950 | 1030-1117 | 1252-1686 | 1770-1920 | 2052-2635 | 2710-3237 | 3361-3495 | 3595-3702 | 3789-4883 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0016787 Molecular Function hydrolase activity
Swiss-Prot
Best HitE_value Description
Q9LNG50.0PPP7L_ARATH Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
TrEMBL
Best HitE_value Description
A5C0F51e-154A5C0F5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040772 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
act:ACLA_0100202e-40K04460PPP5C, PP5protein phosphatase 5
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9143(8 genes,6 taxa):Arabidopsis thalianaAT1G48120.1
ORTHOMCL9143(8 genes,6 taxa):Brassica oleraceaBol045154
ORTHOMCL9143(8 genes,6 taxa):Brassica rapaBra018709
ORTHOMCL9143(8 genes,6 taxa):Vitis viniferaGSVIVT01026490001
ORTHOMCL9143(8 genes,6 taxa):Oryza sativaOs01t0531200-01
ORTHOMCL9143(8 genes,6 taxa):Oryza sativaOs02t0592600-01
ORTHOMCL9143(8 genes,6 taxa):Oryza sativaOs02t0592600-02
ORTHOMCL9143(8 genes,6 taxa):Sorghum bicolorSb10g006880.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:37655362..40697763 (+)A.thalianaChr1:16847781..18009989 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:37716436..40521319 (+)B.rapaA08:14543939..15962959 (+)29
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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