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Basic Information

Gene Model:

Bol045146

Gene Family:

Not classificated

Chromosome:

C06

Scaffold:

Scaffold000001_P1

Sequence:

Gene Structure

Nucleotide Length:

5137 bp

Transcript Length:

4551 bp

Protein Length:

1516 aa

Strand:

Location:

C06: 40240992 : 40246128

Gene CDSs(8):

1-2427 | 2548-2634 | 2705-3355 | 3439-3898 | 3979-4193 | 4272-4577 | 4651-4714 | 4797-5137 |

Protein Sequence Features

Interpro

Database	Terms	Identifier	Start	End	E-value	InterPro ID	Description
Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology

GO Term	GO Type	Description
GO:0000166	Molecular Function	nucleotide binding
GO:0005524	Molecular Function	ATP binding
GO:0006810	Biological Process	transport
GO:0016021	Cellular Component	integral to membrane
GO:0016887	Molecular Function	ATPase activity
GO:0017111	Molecular Function	nucleoside-triphosphatase activity
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0055085	Biological Process	transmembrane transport

Swiss-Prot

Best Hit	E_value	Description
Q7DM58	0.0	AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2

TrEMBL

Best Hit	E_value	Description
D7LHC4	0.0	D7LHC4_ARALY ATMRP4 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483963 PE=4 SV=1

KEGG

Best Hit	E_value	KO	EC or Symbol	Description
hsa:1244	0.0	K05666	ABCC2	ATP-binding cassette, subfamily C (CFTR/MRP), member 2

Gene Cluster

Orthologs

OrthoMCL Group	Species	Gene List
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT1G04120.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT1G30400.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT1G30410.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT1G30420.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT2G07680.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT2G34660.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT2G47800.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT3G13080.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT3G13090.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT3G13100.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT3G21250.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT3G59140.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT3G60160.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT3G60970.1
ORTHOMCL14(158 genes,8 taxa):	Arabidopsis thaliana	AT3G62700.1
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol007350
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol010244
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol015782
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol015783
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol016110
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol018795
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol020511
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol022556
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol022557
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol023826
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol027378
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol029753
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol035509
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol035512
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol037076
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol038382
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol040869
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol043186
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol044488
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol044609
ORTHOMCL14(158 genes,8 taxa):	Brassica oleracea	Bol045146
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra001488
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra001490
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra003402
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra005402
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra007434
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra007695
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra010773
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra012617
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra014879
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra015291
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra018722
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra023893
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra031267
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra032248
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra032385
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra032386
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra034706
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra036682
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra039348
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra039368
ORTHOMCL14(158 genes,8 taxa):	Brassica rapa	Bra039369
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01010326001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01014628001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01014629001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01014631001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01014632001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01014633001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01015960001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01016879001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01016880001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01018403001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01019467001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01019469001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01019471001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01019473001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01019475001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01019476001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01021589001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01021594001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01021595001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01027990001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01028440001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01028722001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01028744001
ORTHOMCL14(158 genes,8 taxa):	Vitis vinifera	GSVIVT01037789001
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os01t0173900-01
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os01t0356400-01
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os01t0902100-00
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os02t0288400-00
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os02t0288700-00
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os03t0142800-01
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os03t0142800-02
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os04t0209200-01
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os04t0209300-01
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os04t0588700-01
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os04t0620066-00
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os05t0196100-01
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os05t0196100-02
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os06t0158900-00
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os06t0184766-00
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os06t0561800-00
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os11t0155600-01
ORTHOMCL14(158 genes,8 taxa):	Oryza sativa	Os12t0562700-00
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0001s10240.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0001s37330.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0001s37340.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0002s20700.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0002s25710.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0003s02950.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0003s02950.2
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0003s13560.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0003s18100.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0003s19650.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0003s19660.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0003s19670.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0003s19680.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0003s19800.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0004s03470.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0008s17960.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0010s06540.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0011s04290.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0011s09360.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0011s09370.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0012s01200.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0012s01210.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0014s12500.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0014s17830.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0014s18670.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0015s06010.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0015s06010.2
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0016s13080.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0018s14660.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0249s00200.1
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_0249s00200.2
ORTHOMCL14(158 genes,8 taxa):	Populus trichocarpa	POPTR_1557s00200.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb01g038917.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb01g045940.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb01g047430.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb03g004300.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb03g014130.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb03g022890.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb06g002070.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb06g002080.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb06g014250.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb06g026830.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb06g028880.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb07g027770.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb09g006080.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb10g004070.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb10g005720.1
ORTHOMCL14(158 genes,8 taxa):	Sorghum bicolor	Sb10g022190.1
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.contig_33848.1
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_10.60
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_12.188
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_122.19
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_131.42
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_17.64
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_17.66
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_43.1
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_87.35
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_9.219
ORTHOMCL14(158 genes,8 taxa):	Carica papaya	evm.TU.supercontig_97.97

Tandem Duplication

Cluster	Gene Num.	Gene List
The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis

Synteny Genes

Compared to A.thaliana

Compared to B.rapa

Synteny Regions

Species	Region	Mapped Species	Mapped Region	Num. of Genewise
B.oleracea	C06:37655362..40697763 (+)	A.thaliana	Chr1:16847781..18009989 (+)	81

Species	Region	Mapped Species	Mapped Region	Num. of Genewise
B.oleracea	C06:37716436..40521319 (+)	B.rapa	A08:14543939..15962959 (+)	29

Trplicated Block

Block	Best Hit	Start	END	Chromosome	Subgenome	Num. of Gene Pairs on Block
Note: this gene was no corresponding triplicated genes.

@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.