Basic Information
Gene Model:Bol045122
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000001_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2038 bp
Transcript Length:1107 bp
Protein Length:368 aa
Strand:-
Location:C06: 40657826 : 40659863
Gene CDSs(6): 1-191 | 763-825 | 925-1041 | 1137-1545 | 1624-1775 | 1864-2038 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-1145NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
D7L8091e-165D7L809_ARALY Nodulin MtN21 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479315 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3853(12 genes,8 taxa):Arabidopsis thalianaAT3G18200.1
ORTHOMCL3853(12 genes,8 taxa):Brassica oleraceaBol022900
ORTHOMCL3853(12 genes,8 taxa):Brassica oleraceaBol030920
ORTHOMCL3853(12 genes,8 taxa):Brassica oleraceaBol045122
ORTHOMCL3853(12 genes,8 taxa):Brassica rapaBra001699
ORTHOMCL3853(12 genes,8 taxa):Brassica rapaBra018748
ORTHOMCL3853(12 genes,8 taxa):Brassica rapaBra021301
ORTHOMCL3853(12 genes,8 taxa):Vitis viniferaGSVIVT01008361001
ORTHOMCL3853(12 genes,8 taxa):Oryza sativaOs01t0117900-02
ORTHOMCL3853(12 genes,8 taxa):Populus trichocarpaPOPTR_0015s04130.1
ORTHOMCL3853(12 genes,8 taxa):Sorghum bicolorSb03g008060.1
ORTHOMCL3853(12 genes,8 taxa):Carica papayaevm.TU.supercontig_999.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:37655362..40697763 (+)A.thalianaChr1:16847781..18009989 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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