Basic Information
Gene Model:Bol045042
Gene Family:ARIADNE Gene Families
Chromosome:Cun
Scaffold:Scaffold000001_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:4561 bp
Transcript Length:1695 bp
Protein Length:564 aa
Strand:-
Location:Scaffold000001_P2: 1925825 : 1930385
Gene CDSs(15): 1-223 | 346-472 | 917-1016 | 1090-1161 | 1355-1402 | 2091-2180 | 2279-2369 | 2669-2776 | 3058-3146 | 3246-3350 | 3446-3618 | 3723-3813 | 3900-4011 | 4133-4257 | 4421-4561 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50089ZF_RING_2 129 173 9.391IPR001841Zinc finger, RING-type
ProfileScanPS50199ZF_RANBP2_2 537 564 8.389IPR001876Zinc finger, RanBP2-type
HMMPantherPTHR11685ARIADNE RING ZINC FI 87 535 1.5e-299Not foundNot found
HMMPantherPTHR11685:SF10ARI-LIKE RING ZINC F 87 535 1.5e-299Not foundNot found
PatternScanPS01358ZF_RANBP2_1 541 560 NAIPR001876Zinc finger, RanBP2-type
PatternScanPS00862OX2_COVAL_FAD 115 148 NAIPR006093Oxygen oxidoreductase covalent FAD-binding site
superfamilySSF57850RING/U-box 106 219 3.6e-11Not foundNot found
superfamilySSF57850RING/U-box 279 337 2.3e-16Not foundNot found
HMMSmartSM00647no description 273 334 0.086IPR002867Zinc finger, C6HC-type
HMMSmartSM00547no description 539 563 4e-06IPR001876Zinc finger, RanBP2-type
HMMSmartSM00647no description 198 260 1.5e-22IPR002867Zinc finger, C6HC-type
HMMPfamPF01485IBR 198 260 5.6e-26IPR002867Zinc finger, C6HC-type
Segsegseg 527 539 NANot foundNot found
Segsegseg 66 85 NANot foundNot found
Segsegseg 14 42 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0005622 Cellular Component intracellular
GO:0008270 Molecular Function zinc ion binding
GO:0009055 Molecular Function electron carrier activity
GO:0016491 Molecular Function oxidoreductase activity
GO:0055114 Biological Process oxidation-reduction process
Swiss-Prot
Best HitE_value Description
Q8W4680.0ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HYH60.0B9HYH6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_822354 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002570000.0K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT1G05890.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31510.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31760.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31770.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31780.1
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004534
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004656
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006452
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006453
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol008223
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol009030
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol014128
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol023324
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol024724
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol041028
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol045042
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra005642
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra006112
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra015463
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021726
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021742
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022479
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022845
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022865
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra023338
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01003757001
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01010742001
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs04t0492100-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs08t0540300-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs09t0513800-01
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0007s02130.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0008s07680.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0010s18800.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0017s06050.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb06g021080.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb07g025570.1
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_71.10
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_99.46
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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