Basic Information
Gene Model:Bol044935
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000001_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:591 bp
Transcript Length:591 bp
Protein Length:196 aa
Strand:+
Location:C06: 38204084 : 38204674
Gene CDSs(1): 1-591 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.730.10no description 24 86 8.1e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 2 20 NANot foundNot found
Segsegseg 58 68 NANot foundNot found
Segsegseg 91 102 NANot foundNot found
Segsegseg 112 137 NANot foundNot found
superfamilySSF54171DNA-binding domain 24 86 4.6e-19IPR016177DNA-binding, integrase-type
HMMPfamPF00847AP2 24 75 3.2e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 25 83 21.878IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 25 89 5.7e-33IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LPE82e-56ERF14_ARATH Ethylene-responsive transcription factor ERF014 OS=Arabidopsis thaliana GN=ERF014 PE=2 SV=1
TrEMBL
Best HitE_value Description
A9PLA67e-32A9PLA6_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=RAP2L16 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G369005e-21K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17581(3 genes,3 taxa):Arabidopsis thalianaAT1G44830.1
ORTHOMCL17581(3 genes,3 taxa):Brassica oleraceaBol044935
ORTHOMCL17581(3 genes,3 taxa):Brassica rapaBra040309
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:37655362..40697763 (+)A.thalianaChr1:16847781..18009989 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:37716436..40521319 (+)B.rapaA08:14543939..15962959 (+)29
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G448301693379216934511Chr1Subgenome_III(LF)36
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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