Basic Information
Gene Model:Bol044696
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1515 bp
Transcript Length:1140 bp
Protein Length:379 aa
Strand:-
Location:C08: 34457144 : 34458658
Gene CDSs(2): 1-1100 | 1476-1515 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 96 203 2.2e-09Not foundNot found
HMMPfamPF03151TPT 214 363 8.6e-41IPR004853Protein of unknown function DUF250
HMMPfamPF00892DUF6 93 196 1.2e-06IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 365 379 NANot foundNot found
Segsegseg 139 170 NANot foundNot found
Segsegseg 123 133 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9ZUH31e-158PUP5_ARATH Probable purine permease 5 OS=Arabidopsis thaliana GN=PUP5 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9HB181e-137B9HB18_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_832018 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11451(7 genes,7 taxa):Arabidopsis thalianaAT2G24220.1
ORTHOMCL11451(7 genes,7 taxa):Brassica oleraceaBol044696
ORTHOMCL11451(7 genes,7 taxa):Brassica rapaBra039238
ORTHOMCL11451(7 genes,7 taxa):Vitis viniferaGSVIVT01003866001
ORTHOMCL11451(7 genes,7 taxa):Populus trichocarpaPOPTR_0006s19860.1
ORTHOMCL11451(7 genes,7 taxa):Sorghum bicolorSb02g032510.1
ORTHOMCL11451(7 genes,7 taxa):Carica papayaevm.TU.supercontig_46.156
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:33940594..34597967 (-)A.thalianaChr4:14878783..15522593 (+)36
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:34086893..35195467 (+)B.rapaA09:7206614..7830755 (-)50
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
IAT2G242201030011610301787Chr2Subgenome_III(LF)104
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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