Basic Information
Gene Model:Bol044655
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1050 bp
Transcript Length:1050 bp
Protein Length:349 aa
Strand:-
Location:C08: 33896973 : 33898022
Gene CDSs(1): 1-1050 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11132SOLUTE CARRIER FAMIL 5 321 7.4e-89Not foundNot found
HMMPfamPF03151TPT 167 307 4.3e-49IPR004853Protein of unknown function DUF250
Segsegseg 309 324 NANot foundNot found
Segsegseg 245 256 NANot foundNot found
superfamilySSF103481Multidrug resistance 60 161 7.8e-06Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9NQQ78e-23S35C2_HUMAN Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q9SKJ70.0Q9SKJ7_ARATH Putative phosphate/phosphoenolpyruvate translocator protein OS=Arabidopsis thaliana GN=At2g25520 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
mbr:MONBRDRAFT_271932e-20K03515REV1DNA repair protein REV1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1141(19 genes,6 taxa):Arabidopsis thalianaAT2G25520.1
ORTHOMCL1141(19 genes,6 taxa):Arabidopsis thalianaAT4G32390.1
ORTHOMCL1141(19 genes,6 taxa):Brassica oleraceaBol009049
ORTHOMCL1141(19 genes,6 taxa):Brassica oleraceaBol017914
ORTHOMCL1141(19 genes,6 taxa):Brassica oleraceaBol026526
ORTHOMCL1141(19 genes,6 taxa):Brassica oleraceaBol043592
ORTHOMCL1141(19 genes,6 taxa):Brassica oleraceaBol044655
ORTHOMCL1141(19 genes,6 taxa):Brassica rapaBra006092
ORTHOMCL1141(19 genes,6 taxa):Brassica rapaBra007795
ORTHOMCL1141(19 genes,6 taxa):Brassica rapaBra008981
ORTHOMCL1141(19 genes,6 taxa):Brassica rapaBra011343
ORTHOMCL1141(19 genes,6 taxa):Brassica rapaBra034256
ORTHOMCL1141(19 genes,6 taxa):Oryza sativaOs01t0802850-00
ORTHOMCL1141(19 genes,6 taxa):Oryza sativaOs05t0494500-01
ORTHOMCL1141(19 genes,6 taxa):Oryza sativaOs05t0494500-02
ORTHOMCL1141(19 genes,6 taxa):Populus trichocarpaPOPTR_0006s26870.1
ORTHOMCL1141(19 genes,6 taxa):Populus trichocarpaPOPTR_0018s01590.1
ORTHOMCL1141(19 genes,6 taxa):Sorghum bicolorSb03g037360.2
ORTHOMCL1141(19 genes,6 taxa):Sorghum bicolorSb09g024250.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:33683678..34912837 (-)A.thalianaChr2:9823965..11004235 (+)112
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
IAT2G255201086082810862357Chr2Subgenome_III(LF)104
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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