Basic Information
Gene Model:Bol044607
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1655 bp
Transcript Length:1260 bp
Protein Length:419 aa
Strand:-
Location:C08: 33309642 : 33311296
Gene CDSs(5): 1-480 | 585-673 | 769-1104 | 1192-1344 | 1454-1655 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.10.10.60no description 202 270 1.3e-17IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 42 178 2.2e-18Not foundNot found
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 206 266 3e-23IPR006447Myb-like DNA-binding region, SHAQKYF class
ProfileScanPS50110RESPONSE_REGULATORY 43 158 25.351IPR001789Signal transduction response regulator, receiver region
ProfileScanPS51294HTH_MYB 203 267 11.519IPR017930Myb-type HTH DNA-binding domain
superfamilySSF46689Homeodomain-like 202 270 2.5e-15IPR009057Homeodomain-like
superfamilySSF52172CheY-like 39 159 1.5e-23IPR011006CheY-like
HMMSmartSM00448no description 42 153 1.1e-13IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 2 163 1.5e-08Not foundNot found
HMMPantherPTHR23283:SF47SENSORY TRANSDUCTION 2 163 1.5e-08Not foundNot found
Segsegseg 350 369 NANot foundNot found
HMMPfamPF00249Myb_DNA-binding 208 263 3.4e-09IPR014778Myb, DNA-binding
HMMPfamPF00072Response_reg 44 148 5.8e-09IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9LZJ81e-101ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7Q0I36e-39A7Q0I3_VITVI Chromosome chr7 scaffold_42, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028060001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G626701e-101K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18717(3 genes,3 taxa):Arabidopsis thalianaAT3G62670.1
ORTHOMCL18717(3 genes,3 taxa):Brassica oleraceaBol044607
ORTHOMCL18717(3 genes,3 taxa):Brassica rapaBra041027
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:31350109..33628428 (+)A.thalianaChr3:21609307..23437344 (+)253
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G626702317655623178294Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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