Basic Information
Gene Model:Bol044591
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1800 bp
Transcript Length:1125 bp
Protein Length:374 aa
Strand:-
Location:C08: 33171032 : 33172831
Gene CDSs(4): 1-559 | 647-882 | 963-1133 | 1642-1800 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 66 339 7.5e-73IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 48 339 2.7e-75IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 68 332 3.2e-76IPR014045Protein phosphatase 2C, N-terminal
HMMSmartSM00331no description 84 339 0.00053IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 59 337 1.2e-84IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 108 116 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Segsegseg 172 187 NANot foundNot found
Segsegseg 22 33 NANot foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 57 341 2.8e-161IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF92PROTEIN PHOSPHATASE 57 341 2.8e-161Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q3EAF91e-173P2C49_ARATH Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1
TrEMBL
Best HitE_value Description
C6TAP01e-131C6TAP0_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43377231e-108K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3962(12 genes,7 taxa):Arabidopsis thalianaAT3G62260.2
ORTHOMCL3962(12 genes,7 taxa):Brassica oleraceaBol002516
ORTHOMCL3962(12 genes,7 taxa):Brassica oleraceaBol014404
ORTHOMCL3962(12 genes,7 taxa):Brassica oleraceaBol044591
ORTHOMCL3962(12 genes,7 taxa):Brassica rapaBra007669
ORTHOMCL3962(12 genes,7 taxa):Vitis viniferaGSVIVT01028192001
ORTHOMCL3962(12 genes,7 taxa):Oryza sativaOs01t0295700-01
ORTHOMCL3962(12 genes,7 taxa):Oryza sativaOs05t0134200-01
ORTHOMCL3962(12 genes,7 taxa):Populus trichocarpaPOPTR_0002s19100.1
ORTHOMCL3962(12 genes,7 taxa):Populus trichocarpaPOPTR_0014s11090.1
ORTHOMCL3962(12 genes,7 taxa):Sorghum bicolorSb03g012020.1
ORTHOMCL3962(12 genes,7 taxa):Sorghum bicolorSb09g002720.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:31350109..33628428 (+)A.thalianaChr3:21609307..23437344 (+)253
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G622602303829023040570Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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