Basic Information
Gene Model:Bol044585
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1269 bp
Transcript Length:1011 bp
Protein Length:336 aa
Strand:-
Location:C08: 33134966 : 33136234
Gene CDSs(4): 1-381 | 465-539 | 636-773 | 853-1269 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00353no description 159 208 0.0052IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 151 203 0.0028IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 159 180 NANot foundNot found
Segsegseg 243 260 NANot foundNot found
superfamilySSF47459HLH, helix-loop-heli 149 227 1.3e-08IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 150 203 10.589IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q8L5W71e-112PIF6_ARATH Transcription factor PIF6 OS=Arabidopsis thaliana GN=PIF6 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0SVF81e-111C0SVF8_ARATH Putative uncharacterized protein At3g62090 (Fragment) OS=Arabidopsis thaliana GN=At3g62090 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G095304e-09K12126PIF3phytochrome-interacting factor 3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18713(3 genes,3 taxa):Arabidopsis thalianaAT3G62090.2
ORTHOMCL18713(3 genes,3 taxa):Brassica oleraceaBol044585
ORTHOMCL18713(3 genes,3 taxa):Brassica rapaBra007660
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:31350109..33628428 (+)A.thalianaChr3:21609307..23437344 (+)253
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G620902298854722990709Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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