Basic Information
Gene Model:Bol044524
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1010 bp
Transcript Length:903 bp
Protein Length:300 aa
Strand:-
Location:C08: 32128474 : 32129483
Gene CDSs(2): 1-849 | 957-1010 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 52 73 NANot foundNot found
HMMPfamPF06217DUF1004 1 300 2.3e-166IPR010409GAGA binding-like
Segsegseg 125 156 NANot foundNot found
Segsegseg 104 115 NANot foundNot found
Segsegseg 20 31 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q8L9991e-126Q8L999_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana GN=BBR/BPC6 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27670(2 genes,2 taxa):Brassica oleraceaBol044524
ORTHOMCL27670(2 genes,2 taxa):Brassica rapaBra007518
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:31350109..33628428 (+)A.thalianaChr3:21609307..23437344 (+)253
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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