Basic Information
Gene Model:Bol044454
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:3271 bp
Transcript Length:1161 bp
Protein Length:386 aa
Strand:-
Location:C08: 31126948 : 31130218
Gene CDSs(6): 1-258 | 969-1040 | 1161-1229 | 2359-2424 | 2511-2627 | 2693-3271 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 218 297 1.9e-14IPR011598Helix-loop-helix DNA-binding
Segsegseg 334 344 NANot foundNot found
Segsegseg 192 210 NANot foundNot found
Segsegseg 56 69 NANot foundNot found
Segsegseg 88 101 NANot foundNot found
Coilcoilcoiled-coil 262 283 NANot foundNot found
HMMPfamPF00010HLH 223 273 1e-06IPR001092Basic helix-loop-helix dimerisation region bHLH
ProfileScanPS50888HLH 216 273 10.671IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPantherPTHR10014BASIC HELIX-LOOP-HEL 218 251 0.00041Not foundNot found
Gene3DG3DSA:4.10.280.10no description 218 299 7.6e-07IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 228 278 2.7e-08IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q3EAI11e-131BH060_ARATH Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7PW986e-73A7PW98_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025528001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G095301e-10K12126PIF3phytochrome-interacting factor 3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10032(8 genes,6 taxa):Arabidopsis thalianaAT3G57800.1
ORTHOMCL10032(8 genes,6 taxa):Brassica oleraceaBol011028
ORTHOMCL10032(8 genes,6 taxa):Brassica oleraceaBol044454
ORTHOMCL10032(8 genes,6 taxa):Brassica rapaBra007358
ORTHOMCL10032(8 genes,6 taxa):Brassica rapaBra014603
ORTHOMCL10032(8 genes,6 taxa):Vitis viniferaGSVIVT01033350001
ORTHOMCL10032(8 genes,6 taxa):Populus trichocarpaPOPTR_0006s05600.1
ORTHOMCL10032(8 genes,6 taxa):Carica papayaevm.TU.supercontig_85.121
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:29129169..31352420 (+)A.thalianaChr3:20318412..21566482 (+)209
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G578002140778921411721Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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