Basic Information
Gene Model:Bol044421
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:866 bp
Transcript Length:756 bp
Protein Length:251 aa
Strand:-
Location:C08: 30583614 : 30584479
Gene CDSs(2): 1-444 | 555-866 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50888HLH 72 124 11.161IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 77 129 4.5e-11IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 120 141 NANot foundNot found
HMMPfamPF00010HLH 72 124 7.1e-16IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPantherPTHR13935ACHAETE-SCUTE TRANSC 77 125 7.8e-06IPR015660Achaete-scute transcription factor related
superfamilySSF47459HLH, helix-loop-heli 61 141 1.2e-14IPR011598Helix-loop-helix DNA-binding
Gene3DG3DSA:4.10.280.10no description 67 140 3.3e-06IPR011598Helix-loop-helix DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9M1K12e-91ORG2_ARATH Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0SV822e-46C0SV82_ARATH Putative uncharacterized protein At2g41240 (Fragment) OS=Arabidopsis thaliana GN=At2g41240 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27658(2 genes,2 taxa):Brassica oleraceaBol044421
ORTHOMCL27658(2 genes,2 taxa):Brassica rapaBra007289
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1963Bol044421 Bol044422 Bol044423 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:29129169..31352420 (+)A.thalianaChr3:20318412..21566482 (+)209
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G569702108411021085150Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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