Basic Information
Gene Model:Bol044402
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:4006 bp
Transcript Length:3036 bp
Protein Length:1011 aa
Strand:-
Location:C08: 30360009 : 30364014
Gene CDSs(10): 1-52 | 229-422 | 499-689 | 771-851 | 927-1817 | 1904-2111 | 2232-2436 | 2529-3301 | 3383-3526 | 3710-4006 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52540P-loop containing nu 365 599 1.9e-53Not foundNot found
superfamilySSF52540P-loop containing nu 695 961 1.3e-75Not foundNot found
Coilcoilcoiled-coil 926 947 NANot foundNot found
PatternScanPS00674AAA 847 865 NAIPR003960ATPase, AAA-type, conserved site
Segsegseg 923 939 NANot foundNot found
Segsegseg 19 33 NANot foundNot found
Segsegseg 244 256 NANot foundNot found
Segsegseg 396 408 NANot foundNot found
Segsegseg 618 640 NANot foundNot found
HMMPfamPF00004AAA 744 930 1.5e-91IPR003959ATPase, AAA-type, core
HMMPfamPF00004AAA 413 598 1.4e-80IPR003959ATPase, AAA-type, core
Gene3DG3DSA:1.10.8.60no description 880 965 1.6e-16Not foundNot found
Gene3DG3DSA:3.40.50.300no description 693 875 3.4e-60Not foundNot found
Gene3DG3DSA:1.10.8.60no description 545 603 3.6e-11Not foundNot found
Gene3DG3DSA:3.40.50.300no description 371 542 1.2e-49Not foundNot found
HMMSmartSM00382no description 410 546 4.9e-17IPR003593ATPase, AAA+ type, core
HMMSmartSM00382no description 741 879 1.1e-20IPR003593ATPase, AAA+ type, core
HMMPantherPTHR23077AAA-FAMILY ATPASE 335 1009 0Not foundNot found
HMMPantherPTHR23077:SF15CALMODULIN-BINDING P 335 1009 0Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0017111 Molecular Function nucleoside-triphosphatase activity
Swiss-Prot
Best HitE_value Description
Q3UMC01e-143SPAT5_MOUSE Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9LD580.0Q9LD58_ARATH Calmodulin-binding protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_304461e-158K13525VCP, CDC48transitional endoplasmic reticulum ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11711(7 genes,7 taxa):Arabidopsis thalianaAT3G56690.1
ORTHOMCL11711(7 genes,7 taxa):Brassica oleraceaBol044402
ORTHOMCL11711(7 genes,7 taxa):Brassica rapaBra007262
ORTHOMCL11711(7 genes,7 taxa):Vitis viniferaGSVIVT01025783001
ORTHOMCL11711(7 genes,7 taxa):Populus trichocarpaPOPTR_0006s03350.1
ORTHOMCL11711(7 genes,7 taxa):Sorghum bicolorSb05g008540.1
ORTHOMCL11711(7 genes,7 taxa):Carica papayaevm.TU.supercontig_5.147
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:29129169..31352420 (+)A.thalianaChr3:20318412..21566482 (+)209
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G566902099369320998695Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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