Basic Information
Gene Model:Bol044337
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000002
Sequence:
 | 
Gene Structure
Nucleotide Length:1247 bp
Transcript Length:1167 bp
Protein Length:388 aa
Strand:-
Location:C08: 29268723 : 29269969
Gene CDSs(2): 1-225 | 306-1247 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01032PP2C 86 94 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
PatternScanPS00217SUGAR_TRANSPORT_2 86 111 NAIPR005829Sugar transporter, conserved site
Segsegseg 317 332 NANot foundNot found
Gene3DG3DSA:3.60.40.10no description 32 365 8.4e-57IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 41 361 6e-156IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 41 361 6e-156Not foundNot found
superfamilySSF81606Protein serine/threo 81 362 8.1e-55IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 153 333 1.7e-29IPR014045Protein phosphatase 2C, N-terminal
HMMSmartSM00332no description 44 359 2.9e-69IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0005215 Molecular Function transporter activity
GO:0006470 Biological Process protein dephosphorylation
GO:0006810 Biological Process transport
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q94CL80.0P2C48_ARATH Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HM151e-160B9HM15_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_563814 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_009429701e-26K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14173(5 genes,3 taxa):Arabidopsis thalianaAT3G55050.1
ORTHOMCL14173(5 genes,3 taxa):Brassica oleraceaBol044184
ORTHOMCL14173(5 genes,3 taxa):Brassica oleraceaBol044337
ORTHOMCL14173(5 genes,3 taxa):Brassica rapaBra007131
ORTHOMCL14173(5 genes,3 taxa):Brassica rapaBra014778
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:29166572..30116123 (-)A.thalianaChr5:289765..679043 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:27373536..34472409 (+)B.rapaA09:10065156..15472209 (+)727
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G550502040048820402595Chr3Subgenome_III(LF)368
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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