Basic Information
Gene Model:Bol044290
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000003_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2064 bp
Transcript Length:783 bp
Protein Length:260 aa
Strand:+
Location:C04: 22160259 : 22162322
Gene CDSs(6): 1-39 | 864-1022 | 1173-1401 | 1531-1647 | 1746-1808 | 1889-2064 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 41 156 8.8e-10Not foundNot found
HMMPfamPF00892DUF6 16 149 1.1e-15IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 44 54 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1635e-375NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LXX81e-126Q9LXX8_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=T5P19_270 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:21916455..23737811 (-)A.thalianaChr3:20396760..21097451 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:21916455..23737811 (+)B.rapaA09:11625941..12575344 (-)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G566202097250320974611Chr3Subgenome_I84
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo