Basic Information
Gene Model:Bol044273
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000003_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:815 bp
Transcript Length:384 bp
Protein Length:127 aa
Strand:-
Location:C04: 22361250 : 22362064
Gene CDSs(5): 1-49 | 179-264 | 370-447 | 553-626 | 719-815 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23283SENSOR HISTIDINE KIN 7 109 2.5e-10Not foundNot found
HMMPantherPTHR23283:SF21TWO-COMPONENT SYSTEM 7 109 2.5e-10Not foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 6 123 18.985IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 2 124 3.3e-18IPR011006CheY-like
HMMPfamPF00072Response_reg 18 114 1.7e-08IPR001789Signal transduction response regulator, receiver region
HMMSmartSM00448no description 5 122 5.6e-09IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 3 123 7.8e-15Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FPR61e-57ARR17_ARATH Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1
TrEMBL
Best HitE_value Description
B4G2945e-51B4G294_ARATH At2g40670 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G563802e-57K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27635(2 genes,2 taxa):Brassica oleraceaBol044273
ORTHOMCL27635(2 genes,2 taxa):Brassica rapaBra014695
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:21916455..23737811 (-)A.thalianaChr3:20396760..21097451 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:21916455..23737811 (+)B.rapaA09:11625941..12575344 (-)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G563802090548020906368Chr3Subgenome_I84
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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