Basic Information
Gene Model:Bol044239
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C04
Scaffold:Scaffold000003_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2312 bp
Transcript Length:1320 bp
Protein Length:439 aa
Strand:-
Location:C04: 22894010 : 22896321
Gene CDSs(7): 1-91 | 498-722 | 815-909 | 992-1181 | 1265-1389 | 1473-1688 | 1935-2312 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01490Aa_trans 29 425 3.5e-110IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 18 436 6.2e-82Not foundNot found
Segsegseg 416 428 NANot foundNot found
Segsegseg 58 71 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FKS81e-24LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1
TrEMBL
Best HitE_value Description
P929620.0P92962_ARATH Proline transporter 2 OS=Arabidopsis thaliana GN=ProT2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL803(22 genes,7 taxa):Arabidopsis thalianaAT2G36590.1
ORTHOMCL803(22 genes,7 taxa):Arabidopsis thalianaAT2G39890.1
ORTHOMCL803(22 genes,7 taxa):Arabidopsis thalianaAT3G55740.1
ORTHOMCL803(22 genes,7 taxa):Brassica oleraceaBol016198
ORTHOMCL803(22 genes,7 taxa):Brassica oleraceaBol016199
ORTHOMCL803(22 genes,7 taxa):Brassica oleraceaBol020446
ORTHOMCL803(22 genes,7 taxa):Brassica oleraceaBol025372
ORTHOMCL803(22 genes,7 taxa):Brassica oleraceaBol044239
ORTHOMCL803(22 genes,7 taxa):Brassica oleraceaBol045430
ORTHOMCL803(22 genes,7 taxa):Brassica rapaBra000154
ORTHOMCL803(22 genes,7 taxa):Brassica rapaBra005004
ORTHOMCL803(22 genes,7 taxa):Brassica rapaBra005005
ORTHOMCL803(22 genes,7 taxa):Brassica rapaBra007187
ORTHOMCL803(22 genes,7 taxa):Brassica rapaBra014722
ORTHOMCL803(22 genes,7 taxa):Brassica rapaBra017046
ORTHOMCL803(22 genes,7 taxa):Vitis viniferaGSVIVT01016390001
ORTHOMCL803(22 genes,7 taxa):Oryza sativaOs03t0644400-01
ORTHOMCL803(22 genes,7 taxa):Oryza sativaOs03t0644400-02
ORTHOMCL803(22 genes,7 taxa):Oryza sativaOs07t0100800-01
ORTHOMCL803(22 genes,7 taxa):Populus trichocarpaPOPTR_0008s06340.1
ORTHOMCL803(22 genes,7 taxa):Populus trichocarpaPOPTR_0010s20180.1
ORTHOMCL803(22 genes,7 taxa):Carica papayaevm.TU.supercontig_19.233
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:21916455..23737811 (-)A.thalianaChr3:20396760..21097451 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:21916455..23737811 (+)B.rapaA09:11625941..12575344 (-)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G557402069549920698271Chr3Subgenome_I84
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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