Basic Information
Gene Model:Bol044203
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C04
Scaffold:Scaffold000003_P2
Sequence:
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Gene Structure
Nucleotide Length:2421 bp
Transcript Length:2166 bp
Protein Length:721 aa
Strand:-
Location:C04: 23528851 : 23531271
Gene CDSs(2): 1-2109 | 2365-2421 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50056TYR_PHOSPHATASE_2 210 261 12.230IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 141 282 32.721IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPantherPTHR10159DUAL SPECIFICITY PRO 138 499 2.1e-280Not foundNot found
HMMPantherPTHR10159:SF18DUAL SPECIFICITY PRO 138 499 2.1e-280Not foundNot found
Segsegseg 549 560 NANot foundNot found
Segsegseg 486 498 NANot foundNot found
Segsegseg 17 29 NANot foundNot found
superfamilySSF55753Actin depolymerizing 603 718 0.005Not foundNot found
superfamilySSF55753Actin depolymerizing 281 406 6.9e-16Not foundNot found
superfamilySSF52799(Phosphotyrosine pro 139 281 3.7e-42Not foundNot found
Gene3DG3DSA:3.40.20.10no description 291 397 9.8e-10Not foundNot found
Gene3DG3DSA:3.90.190.10no description 142 281 1.5e-40Not foundNot found
HMMSmartSM00195no description 141 280 2.6e-35IPR020422Dual specificity phosphatase, subgroup, catalytic domain
PatternScanPS00383TYR_PHOSPHATASE_1 225 235 NAIPR016130Protein-tyrosine phosphatase, active site
HMMPfamPF00782DSPc 141 280 1.9e-34IPR000340Dual specificity phosphatase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
P285632e-20DUS1_MOUSE Dual specificity protein phosphatase 1 OS=Mus musculus GN=Dusp1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9C5S10.0Q9C5S1_ARATH MAP kinase phosphatase OS=Arabidopsis thaliana GN=MKP1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_008995702e-39K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12283(7 genes,6 taxa):Brassica oleraceaBol044203
ORTHOMCL12283(7 genes,6 taxa):Brassica rapaBra014764
ORTHOMCL12283(7 genes,6 taxa):Vitis viniferaGSVIVT01016637001
ORTHOMCL12283(7 genes,6 taxa):Oryza sativaOs05t0115800-01
ORTHOMCL12283(7 genes,6 taxa):Populus trichocarpaPOPTR_0008s04970.1
ORTHOMCL12283(7 genes,6 taxa):Populus trichocarpaPOPTR_0010s21780.1
ORTHOMCL12283(7 genes,6 taxa):Carica papayaevm.TU.supercontig_1696.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:21916455..23737811 (-)A.thalianaChr3:20396760..21097451 (+)81
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:21916455..23737811 (+)B.rapaA09:11625941..12575344 (-)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G552702049608120500019Chr3Subgenome_I84
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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