Basic Information
Gene Model:Bol044023
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:1395 bp
Transcript Length:717 bp
Protein Length:238 aa
Strand:+
Location:C09: 39070792 : 39072186
Gene CDSs(5): 1-94 | 195-227 | 355-577 | 895-1009 | 1144-1395 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50016ZF_PHD_2 182 234 8.992IPR019787Zinc finger, PHD-finger
Segsegseg 170 179 NANot foundNot found
Segsegseg 58 75 NANot foundNot found
HMMPfamPF00628PHD 184 234 1.6e-12IPR019787Zinc finger, PHD-finger
PatternScanPS01359ZF_PHD_1 185 231 NAIPR019786Zinc finger, PHD-type, conserved site
HMMSmartSM00249no description 184 232 1.8e-08IPR001965Zinc finger, PHD-type
superfamilySSF57903FYVE/PHD zinc finger 177 238 9.3e-11IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.10no description 177 238 2.1e-13Not foundNot found
HMMPantherPTHR23123PHD/F-BOX CONTAINING 188 237 6.5e-09Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
O814887e-61Y5621_ARATH PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q9FFF51e-105Q9FFF5_ARATH Nucleic acid binding protein-like OS=Arabidopsis thaliana GN=At5g05610 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
isc:IscW_ISCW0230601e-08K11728BPTF, E(bx)nucleosome-remodeling factor subunit BPTF
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27621(2 genes,2 taxa):Brassica oleraceaBol044023
ORTHOMCL27621(2 genes,2 taxa):Brassica rapaBra009121
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:38329980..39305785 (-)A.thalianaChr5:1496855..2154553 (+)123
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:37411309..39260205 (+)B.rapaA10:2316765..3693243 (-)260
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0561016769911679104Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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