Basic Information
Gene Model:Bol043917
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:1650 bp
Transcript Length:1131 bp
Protein Length:376 aa
Strand:+
Location:C09: 38418792 : 38420441
Gene CDSs(4): 1-283 | 500-864 | 1101-1337 | 1405-1650 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01032PP2C 69 77 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPfamPF00481PP2C 69 314 6.7e-32IPR014045Protein phosphatase 2C, N-terminal
HMMSmartSM00332no description 37 340 5.4e-66IPR001932Protein phosphatase 2C-related
Segsegseg 18 28 NANot foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 32 363 2.3e-147IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 32 363 2.3e-147Not foundNot found
Coilcoilcoiled-coil 173 194 NANot foundNot found
superfamilySSF81606Protein serine/threo 21 344 8e-57IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 52 346 6.2e-54IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q84JD50.0P2C68_ARATH Probable protein phosphatase 2C 68 OS=Arabidopsis thaliana GN=At5g06750 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9IHY71e-156B9IHY7_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_576256 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0384102e-24K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:38329980..39305785 (-)A.thalianaChr5:1496855..2154553 (+)123
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:37411309..39260205 (+)B.rapaA10:2316765..3693243 (-)260
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0675020862662088997Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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