Basic Information
Gene Model:Bol043911
Gene Family:Protein Kinase Gene Families
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
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Gene Structure
Nucleotide Length:3586 bp
Transcript Length:2208 bp
Protein Length:735 aa
Strand:-
Location:C09: 38385171 : 38388756
Gene CDSs(16): 1-186 | 253-409 | 488-627 | 708-855 | 962-1227 | 1317-1585 | 1668-1999 | 2082-2147 | 2243-2308 | 2401-2472 | 2563-2631 | 2717-2788 | 2878-2943 | 3018-3089 | 3165-3297 | 3493-3586 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 466 617 7.9e-21IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 165 187 0.0034IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 189 210 0.011IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 142 164 0.0029IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 96 115 0.018IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 28 69 8.7e-09IPR013210Leucine-rich repeat, N-terminal
superfamilySSF52058L domain-like 25 253 2.1e-35Not foundNot found
superfamilySSF56112Protein kinase-like 384 690 1.7e-65IPR011009Protein kinase-like domain
Segsegseg 606 614 NANot foundNot found
Segsegseg 76 100 NANot foundNot found
Segsegseg 284 309 NANot foundNot found
Segsegseg 361 379 NANot foundNot found
HMMSmartSM00220no description 414 694 8.3e-16IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 414 690 7.2e-12IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
Gene3DG3DSA:1.10.510.10no description 494 701 7.2e-38Not foundNot found
Gene3DG3DSA:3.80.10.10no description 25 253 3.5e-35Not foundNot found
Gene3DG3DSA:3.30.200.20no description 395 491 1.1e-17Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 414 694 32.937IPR000719Protein kinase, catalytic domain
PatternScanPS00108PROTEIN_KINASE_ST 536 548 NAIPR008271Serine/threonine-protein kinase, active site
HMMPantherPTHR23258SERINE-THREONINE PRO 75 597 4e-174Not foundNot found
HMMPantherPTHR23258:SF463STRUBBELIG RECEPTOR 75 597 4e-174Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9FG240.0SRF2_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0LGS70.0C0LGS7_ARATH Leucine-rich repeat receptor-like protein kinase (Fragment) OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_04g0209903e-54K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:38329980..39305785 (-)A.thalianaChr5:1496855..2154553 (+)123
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:37411309..39260205 (+)B.rapaA10:2316765..3693243 (-)260
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0682021128692116754Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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