Basic Information
Gene Model:Bol043863
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:3976 bp
Transcript Length:2319 bp
Protein Length:772 aa
Strand:+
Location:C09: 38121857 : 38125832
Gene CDSs(9): 1-124 | 914-1093 | 1182-1637 | 1745-1821 | 2005-3186 | 3287-3400 | 3574-3657 | 3765-3812 | 3923-3976 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23283SENSOR HISTIDINE KIN 18 131 9.8e-10Not foundNot found
HMMPantherPTHR23283:SF21TWO-COMPONENT SYSTEM 18 131 9.8e-10Not foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 17 139 25.604IPR001789Signal transduction response regulator, receiver region
ProfileScanPS51294HTH_MYB 227 286 9.307IPR017930Myb-type HTH DNA-binding domain
HMMSmartSM00448no description 16 135 3.5e-22IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:1.10.10.60no description 226 289 3.9e-21IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 16 139 2.1e-20Not foundNot found
HMMPfamPF00072Response_reg 18 136 5.6e-23IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00249Myb_DNA-binding 232 282 9.3e-08IPR014778Myb, DNA-binding
Segsegseg 317 335 NANot foundNot found
Segsegseg 626 637 NANot foundNot found
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 230 285 2.7e-34IPR006447Myb-like DNA-binding region, SHAQKYF class
superfamilySSF46689Homeodomain-like 226 289 2e-18IPR009057Homeodomain-like
superfamilySSF52172CheY-like 15 139 5.2e-25IPR011006CheY-like
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9LYP51e-167ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9ID117e-53B9ID11_POPTR Type-b response regulator OS=Populus trichocarpa GN=PtRR20 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G072100.0K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:38050816..38388756 (-)A.thalianaChr5:24667973..25028414 (+)21
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:37411309..39260205 (+)B.rapaA10:2316765..3693243 (-)260
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0721022522372256018Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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