Basic Information
Gene Model:Bol043849
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:2022 bp
Transcript Length:1329 bp
Protein Length:442 aa
Strand:-
Location:C09: 38041699 : 38043720
Gene CDSs(7): 1-253 | 340-491 | 599-877 | 1069-1324 | 1421-1537 | 1646-1708 | 1814-2022 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 180 191 NANot foundNot found
Segsegseg 291 300 NANot foundNot found
Segsegseg 357 370 NANot foundNot found
HMMPfamPF00892DUF6 308 375 5.5e-07IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 27 160 8.7e-14IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 232 382 1.1e-08Not foundNot found
superfamilySSF103481Multidrug resistance 52 167 6e-09Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-565NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FL410.0Q9FL41_ARATH MtN21 nodulin protein-like OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:37920268..38328043 (+)A.thalianaChr5:2136160..2455546 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:37411309..39260205 (+)B.rapaA10:2316765..3693243 (-)260
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0705021913852193416Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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