Basic Information
Gene Model:Bol043768
Gene Family:ARIADNE Gene Families
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:2053 bp
Transcript Length:1983 bp
Protein Length:660 aa
Strand:+
Location:C09: 37633630 : 37635682
Gene CDSs(2): 1-788 | 859-2053 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00647no description 221 284 0.0067IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 144 212 5.9e-21IPR002867Zinc finger, C6HC-type
HMMPantherPTHR11685:SF9ARI-LIKE RING ZINC F 47 481 2e-170Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 47 481 2e-170Not foundNot found
HMMPfamPF01485IBR 144 212 9.1e-18IPR002867Zinc finger, C6HC-type
Segsegseg 401 412 NANot foundNot found
Segsegseg 176 184 NANot foundNot found
Segsegseg 75 87 NANot foundNot found
PatternScanPS01358ZF_RANBP2_1 455 474 NAIPR001876Zinc finger, RanBP2-type
superfamilySSF57850RING/U-box 83 148 0.016Not foundNot found
superfamilySSF57850RING/U-box 231 290 4.5e-11Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005622 Cellular Component intracellular
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9C5A41e-152ARI16_ARATH Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana GN=ARI16 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9R7N12e-52B9R7N1_RICCO Protein ariadne-1, putative OS=Ricinus communis GN=RCOM_1593320 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15933203e-53K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37985607 (-)A.thalianaChr5:2455634..4703084 (+)379
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:37411309..39260205 (+)B.rapaA10:2316765..3693243 (-)260
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0873028458242847415Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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