Basic Information
Gene Model:Bol043626
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:1718 bp
Transcript Length:831 bp
Protein Length:276 aa
Strand:+
Location:C09: 36759114 : 36760831
Gene CDSs(8): 1-80 | 252-379 | 537-635 | 728-886 | 989-1079 | 1193-1193 | 1373-1447 | 1521-1718 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 29 250 1.1e-63IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 64 72 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
superfamilySSF81606Protein serine/threo 12 250 1.1e-65IPR001932Protein phosphatase 2C-related
Segsegseg 254 264 NANot foundNot found
HMMSmartSM00332no description 23 248 6.9e-71IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 28 250 0.00095IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 11 250 1.5e-102IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 11 250 1.5e-102Not foundNot found
HMMPfamPF00481PP2C 32 243 3.4e-44IPR014045Protein phosphatase 2C, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q8LAY81e-130P2C69_ARATH Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RNR41e-114B9RNR4_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0920170 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15797706e-31K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:36421852..36862619 (-)A.thalianaChr5:8512042..8892990 (+)16
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37404597 (+)B.rapaA10:897866..2370845 (+)281
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1074033935693396200Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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