Basic Information
Gene Model:Bol043600
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:1205 bp
Transcript Length:666 bp
Protein Length:221 aa
Strand:+
Location:C09: 36570618 : 36571822
Gene CDSs(4): 1-220 | 429-619 | 760-923 | 1115-1205 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.20.5.110no description 112 191 7.8e-23Not foundNot found
HMMPfamPF00957Synaptobrevin 124 212 2.3e-41IPR001388Synaptobrevin
HMMPantherPTHR21136SNARE PROTEINS 7 220 4.6e-107Not foundNot found
HMMPantherPTHR21136:SF8VAMP-7 7 220 4.6e-107Not foundNot found
ProfileScanPS50892V_SNARE 127 187 18.324IPR001388Synaptobrevin
ProfileScanPS50859LONGIN 7 112 30.584IPR010908Longin
Segsegseg 189 208 NANot foundNot found
PatternScanPS00417SYNAPTOBREVIN 145 164 NAIPR001388Synaptobrevin
superfamilySSF64356SNARE-like 2 120 5.3e-33IPR011012Longin-like
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9LFP11e-120VA713_ARATH Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7P5V61e-109A7P5V6_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032676001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G111501e-120K08515VAMP7vesicle-associated membrane protein 7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10471(8 genes,8 taxa):Arabidopsis thalianaAT5G11150.1
ORTHOMCL10471(8 genes,8 taxa):Brassica oleraceaBol043600
ORTHOMCL10471(8 genes,8 taxa):Brassica rapaBra008987
ORTHOMCL10471(8 genes,8 taxa):Vitis viniferaGSVIVT01035876001
ORTHOMCL10471(8 genes,8 taxa):Oryza sativaOs06t0174400-01
ORTHOMCL10471(8 genes,8 taxa):Populus trichocarpaPOPTR_0018s01900.1
ORTHOMCL10471(8 genes,8 taxa):Sorghum bicolorSb10g005060.1
ORTHOMCL10471(8 genes,8 taxa):Carica papayaevm.TU.supercontig_217.14
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:36421852..36862619 (-)A.thalianaChr5:8512042..8892990 (+)16
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37404597 (+)B.rapaA10:897866..2370845 (+)281
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1115035462863548111Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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