Basic Information
Gene Model:Bol043598
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:1165 bp
Transcript Length:576 bp
Protein Length:191 aa
Strand:+
Location:C09: 36567408 : 36568572
Gene CDSs(6): 1-91 | 206-316 | 433-525 | 622-771 | 868-926 | 1094-1165 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.2020no description 8 191 6.3e-57Not foundNot found
HMMPfamPF00156Pribosyltran 38 162 2.2e-40IPR000836Phosphoribosyltransferase
HMMPantherPTHR10210RIBOSE-PHOSPHATE PYR 128 161 2.3e-05Not foundNot found
HMMPantherPTHR10210:SF3RIBOSE-PHOSPHATE PYR 128 161 2.3e-05Not foundNot found
HAMAPMF_00004APT_MF_00004 15 185 31.837IPR005764Adenine phosphoribosyl transferase
HMMTigrTIGR01090apt: adenine phospho 17 185 1.9e-78IPR005764Adenine phosphoribosyl transferase
superfamilySSF53271PRTase-like 8 182 3.7e-55Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003999 Molecular Function adenine phosphoribosyltransferase activity
GO:0006168 Biological Process adenine salvage
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
Q425631e-80APT2_ARATH Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LFP01e-100Q9LFP0_ARATH Adenine phosphoribosyltransferase-like protein OS=Arabidopsis thaliana GN=F2I11_50 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G111601e-101K00759E2.4.2.7, aptadenine phosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:36421852..36862619 (-)A.thalianaChr5:8512042..8892990 (+)16
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37404597 (+)B.rapaA10:897866..2370845 (+)281
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1116035505203552207Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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