Basic Information
Gene Model:Bol043558
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:735 bp
Transcript Length:735 bp
Protein Length:244 aa
Strand:+
Location:C09: 36290160 : 36290894
Gene CDSs(1): 1-735 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00847AP2 60 111 6.1e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 60 121 3.8e-23IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 148 161 NANot foundNot found
Segsegseg 2 16 NANot foundNot found
superfamilySSF54171DNA-binding domain 60 121 4.2e-23IPR016177DNA-binding, integrase-type
ProfileScanPS51032AP2_ERF 61 118 23.420IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 61 124 1.8e-35IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LYD32e-91DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RRY31e-53B9RRY3_RICCO Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_0799320 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G115903e-91K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8407(9 genes,5 taxa):Arabidopsis thalianaAT5G11590.1
ORTHOMCL8407(9 genes,5 taxa):Brassica oleraceaBol024718
ORTHOMCL8407(9 genes,5 taxa):Brassica oleraceaBol043558
ORTHOMCL8407(9 genes,5 taxa):Brassica rapaBra008952
ORTHOMCL8407(9 genes,5 taxa):Brassica rapaBra023332
ORTHOMCL8407(9 genes,5 taxa):Populus trichocarpaPOPTR_0006s25500.1
ORTHOMCL8407(9 genes,5 taxa):Populus trichocarpaPOPTR_0006s25500.2
ORTHOMCL8407(9 genes,5 taxa):Populus trichocarpaPOPTR_0018s00270.1
ORTHOMCL8407(9 genes,5 taxa):Carica papayaevm.TU.supercontig_7.260
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37985607 (-)A.thalianaChr5:2455634..4703084 (+)379
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37404597 (+)B.rapaA10:897866..2370845 (+)281
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1159037275343728726Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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