| Basic Information |
| Gene Model: | Bol043558 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | C09 |
| Scaffold: | Scaffold000004 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 735 bp |
| Transcript Length: | 735 bp |
| Protein Length: | 244 aa |
| Strand: | + |
| Location: | C09: 36290160 : 36290894 |
| Gene CDSs(1): | 1-735 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | HMMPfam | PF00847 | AP2 |
60 |
111 |
6.1e-21 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | Gene3D | G3DSA:3.30.730.10 | no description |
60 |
121 |
3.8e-23 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | Seg | seg | seg |
148 |
161 |
NA | Not found | Not found | | Seg | seg | seg |
2 |
16 |
NA | Not found | Not found | | superfamily | SSF54171 | DNA-binding domain |
60 |
121 |
4.2e-23 | IPR016177 | DNA-binding, integrase-type | | ProfileScan | PS51032 | AP2_ERF |
61 |
118 |
23.420 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | HMMSmart | SM00380 | no description |
61 |
124 |
1.8e-35 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0003677 |
Molecular Function |
DNA binding | | GO:0003700 |
Molecular Function |
sequence-specific DNA binding transcription factor activity | | GO:0006355 |
Biological Process |
regulation of transcription, DNA-dependent |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q9LYD3 | 2e-91 | DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | B9RRY3 | 1e-53 | B9RRY3_RICCO Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_0799320 PE=4 SV=1 |
|
| KEGG |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL8407(9 genes,5 taxa): | Arabidopsis thaliana | AT5G11590.1 | | ORTHOMCL8407(9 genes,5 taxa): | Brassica oleracea | Bol024718 | | ORTHOMCL8407(9 genes,5 taxa): | Brassica oleracea | Bol043558 | | ORTHOMCL8407(9 genes,5 taxa): | Brassica rapa | Bra008952 | | ORTHOMCL8407(9 genes,5 taxa): | Brassica rapa | Bra023332 | | ORTHOMCL8407(9 genes,5 taxa): | Populus trichocarpa | POPTR_0006s25500.1 | | ORTHOMCL8407(9 genes,5 taxa): | Populus trichocarpa | POPTR_0006s25500.2 | | ORTHOMCL8407(9 genes,5 taxa): | Populus trichocarpa | POPTR_0018s00270.1 | | ORTHOMCL8407(9 genes,5 taxa): | Carica papaya | evm.TU.supercontig_7.260 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Compared to A.thaliana |
Compared to B.rapa |
| Synteny Regions |
|
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | | R | AT5G11590 | 3727534 | 3728726 | Chr5 | Subgenome_III(LF) | 638 | |
|
