Basic Information
Gene Model:Bol043483
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:2102 bp
Transcript Length:1650 bp
Protein Length:549 aa
Strand:+
Location:C09: 35830460 : 35832561
Gene CDSs(3): 1-1065 | 1446-1667 | 1740-2102 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR10283CATION TRANSPORTER R 102 549 3.3e-228Not foundNot found
HMMPantherPTHR10283:SF13SODIUM/CARBOXYLATE C 102 549 3.3e-228Not foundNot found
HMMPfamPF00939Na_sulph_symp 81 549 5.5e-259IPR001898Sodium/sulphate symporter
HMMTigrTIGR00785dass: transporter, d 101 543 1.2e-212IPR001898Sodium/sulphate symporter
Segsegseg 64 78 NANot foundNot found
Segsegseg 128 144 NANot foundNot found
Segsegseg 191 203 NANot foundNot found
Segsegseg 375 387 NANot foundNot found
Segsegseg 2 13 NANot foundNot found
Segsegseg 15 39 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006814 Biological Process sodium ion transport
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q413640.0SOT1_SPIOL 2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9LXV30.0Q9LXV3_ARATH 2-oxoglutarate/malate translocator-like protein OS=Arabidopsis thaliana GN=T24H18_30 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:5416431e-127K03319TC.DASSdivalent anion:Na+ symporter, DASS family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10485(8 genes,7 taxa):Arabidopsis thalianaAT5G12860.1
ORTHOMCL10485(8 genes,7 taxa):Brassica oleraceaBol043483
ORTHOMCL10485(8 genes,7 taxa):Brassica rapaBra008876
ORTHOMCL10485(8 genes,7 taxa):Vitis viniferaGSVIVT01025268001
ORTHOMCL10485(8 genes,7 taxa):Oryza sativaOs12t0515400-01
ORTHOMCL10485(8 genes,7 taxa):Oryza sativaOs12t0515400-02
ORTHOMCL10485(8 genes,7 taxa):Populus trichocarpaPOPTR_0001s26580.1
ORTHOMCL10485(8 genes,7 taxa):Sorghum bicolorSb08g016630.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37985607 (-)A.thalianaChr5:2455634..4703084 (+)379
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37404597 (+)B.rapaA10:897866..2370845 (+)281
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1286040596864061950Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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