Basic Information
Gene Model:Bol043416
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:1674 bp
Transcript Length:939 bp
Protein Length:312 aa
Strand:+
Location:C09: 35338456 : 35340129
Gene CDSs(6): 1-179 | 454-570 | 654-903 | 982-1143 | 1236-1249 | 1458-1674 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 233 256 NANot foundNot found
superfamilySSF103481Multidrug resistance 42 136 7.6e-06Not foundNot found
HMMPfamPF00892DUF6 17 129 6.3e-05IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-335NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FNA51e-137Q9FNA5_ARATH Similarity to MtN21 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37985607 (-)A.thalianaChr5:2455634..4703084 (+)379
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37404597 (+)B.rapaA10:897866..2370845 (+)281
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1367044070774409011Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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