Basic Information
Gene Model:Bol043397
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000004
Sequence:
 | 
Gene Structure
Nucleotide Length:636 bp
Transcript Length:636 bp
Protein Length:211 aa
Strand:+
Location:C09: 35187873 : 35188508
Gene CDSs(1): 1-636 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.730.10no description 17 78 1.4e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 18 81 7.1e-34IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 17 78 2.9e-22IPR016177DNA-binding, integrase-type
ProfileScanPS51032AP2_ERF 18 75 20.745IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 17 68 3.5e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 80 106 NANot foundNot found
Segsegseg 145 166 NANot foundNot found
Segsegseg 51 63 NANot foundNot found
Segsegseg 5 11 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9M6448e-78LEP_ARATH Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GYC28e-42B9GYC2_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=ERF66 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G139101e-77K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6675(10 genes,8 taxa):Arabidopsis thalianaAT5G13910.1
ORTHOMCL6675(10 genes,8 taxa):Brassica oleraceaBol043397
ORTHOMCL6675(10 genes,8 taxa):Brassica rapaBra006222
ORTHOMCL6675(10 genes,8 taxa):Vitis viniferaGSVIVT01032961001
ORTHOMCL6675(10 genes,8 taxa):Oryza sativaOs02t0520000-00
ORTHOMCL6675(10 genes,8 taxa):Oryza sativaOs04t0399800-00
ORTHOMCL6675(10 genes,8 taxa):Populus trichocarpaPOPTR_0001s15710.1
ORTHOMCL6675(10 genes,8 taxa):Populus trichocarpaPOPTR_0003s07540.1
ORTHOMCL6675(10 genes,8 taxa):Sorghum bicolorSb06g014800.1
ORTHOMCL6675(10 genes,8 taxa):Carica papayaevm.TU.supercontig_70.49
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37985607 (-)A.thalianaChr5:2455634..4703084 (+)379
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:34943029..37404597 (+)B.rapaA10:897866..2370845 (+)281
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1391044824504483085Chr5Subgenome_III(LF)638
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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