Basic Information
Gene Model:Bol043134
Gene Family:Protein Kinase Gene Families
Chromosome:C07
Scaffold:Scaffold000006
Sequence:
 | 
Gene Structure
Nucleotide Length:3892 bp
Transcript Length:2772 bp
Protein Length:923 aa
Strand:-
Location:C07: 34899290 : 34903181
Gene CDSs(15): 1-222 | 309-441 | 527-716 | 798-866 | 950-1076 | 1172-1377 | 1464-1693 | 1762-1830 | 1905-1976 | 2051-2119 | 2205-2273 | 2340-2408 | 2476-3114 | 3196-3736 | 3826-3892 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52058L domain-like 366 524 5.4e-30Not foundNot found
superfamilySSF56112Protein kinase-like 605 904 4.7e-79IPR011009Protein kinase-like domain
PatternScanPS00108PROTEIN_KINASE_ST 755 767 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 639 661 NAIPR017441Protein kinase, ATP binding site
Segsegseg 540 552 NANot foundNot found
Segsegseg 502 516 NANot foundNot found
Segsegseg 432 447 NANot foundNot found
HMMPfamPF00069Pkinase 633 845 1.5e-45IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 505 527 0.021IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 481 503 0.00064IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 458 479 0.014IPR001611Leucine-rich repeat
Gene3DG3DSA:1.10.510.10no description 708 909 1.1e-49Not foundNot found
Gene3DG3DSA:3.30.200.20no description 607 708 7.9e-21Not foundNot found
Gene3DG3DSA:3.80.10.10no description 393 524 1.8e-22Not foundNot found
HMMSmartSM00219no description 633 904 1e-25IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 633 908 7e-39IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00369no description 503 527 89IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 479 502 7.4IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 456 478 11IPR003591Leucine-rich repeat, typical subtype
HMMPantherPTHR23258SERINE-THREONINE PRO 75 911 1.2e-174Not foundNot found
HMMPantherPTHR23258:SF418PTO-LIKE KINASE 75 911 1.2e-174Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 633 915 40.004IPR000719Protein kinase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
C0LGV00.0Y5487_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9S5210.0B9S521_RICCO Kinase, putative OS=Ricinus communis GN=RCOM_1720210 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G137902e-70K13417SERK4, BKK1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13184(6 genes,6 taxa):Arabidopsis thalianaAT5G48740.1
ORTHOMCL13184(6 genes,6 taxa):Brassica oleraceaBol043134
ORTHOMCL13184(6 genes,6 taxa):Brassica rapaBra037463
ORTHOMCL13184(6 genes,6 taxa):Vitis viniferaGSVIVT01028662001
ORTHOMCL13184(6 genes,6 taxa):Populus trichocarpaPOPTR_0002s24420.1
ORTHOMCL13184(6 genes,6 taxa):Carica papayaevm.TU.supercontig_8.144
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:34530772..34989793 (+)A.thalianaChr5:19366483..19843807 (+)66
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:33965676..35286560 (+)B.rapaA09:6919936..7371905 (-)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo