Basic Information
Gene Model:Bol042954
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000006
Sequence:
 | 
Gene Structure
Nucleotide Length:2680 bp
Transcript Length:1077 bp
Protein Length:358 aa
Strand:+
Location:C07: 33429828 : 33432507
Gene CDSs(7): 1-197 | 264-329 | 460-573 | 1247-1493 | 2062-2223 | 2310-2458 | 2539-2680 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 24 156 1.4e-07IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 40 64 NANot foundNot found
Segsegseg 176 185 NANot foundNot found
superfamilySSF103481Multidrug resistance 48 161 2e-08Not foundNot found
superfamilySSF103481Multidrug resistance 225 335 6.6e-08Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1639e-395NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LRS51e-146Q9LRS5_ARATH Similarity to integral membrane protein nodulin OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12895(6 genes,3 taxa):Arabidopsis thalianaAT3G28070.1
ORTHOMCL12895(6 genes,3 taxa):Arabidopsis thalianaAT3G28080.1
ORTHOMCL12895(6 genes,3 taxa):Arabidopsis thalianaAT3G28100.1
ORTHOMCL12895(6 genes,3 taxa):Brassica oleraceaBol042954
ORTHOMCL12895(6 genes,3 taxa):Brassica rapaBra025321
ORTHOMCL12895(6 genes,3 taxa):Brassica rapaBra033037
Tandem Duplication
ClusterGene Num.Gene List
Cluster_5882Bol042953 Bol042954 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:32384859..34088266 (-)A.thalianaChr5:15884001..16480584 (+)43
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:32541733..34098976 (+)B.rapaA09:6365277..6751074 (-)42
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
LAT3G281001045609910460965Chr3Subgenome_III(LF)196
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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